| DAS |
This is Lincoln Stein's proposal for a Distributed Annotation System.
It is meant as a system to coordinate community annotations of genbank
sequences. It uses xml based on GFF to represent annotations, similar
to GAME. |
| GFF |
A basic way of representing genomic annotations. GAME and
DAS both share features of GFF. |
| XML Examples |
Some basic xml examples for biology. |
| BioML |
A very flexible dtd for biosequence data released by proteomics. |
| PharmTools |
A java package which contains a BlastXML dtd and some java parsers
for that dtd. Here's the dtd
,a note
directed at bioperl and an xsl
stylesheet for the dtd. |
| blastxml |
Here's another blastxml that the guys from SmithKline Beecham posted
on the bioxml mailing list. Yes, it has the same name as the Pharm
Tools xml. Namespaces, anyone? |
| XOL |
Here's an xml from Peter Karp's group from Pangea Systems. XML-Based
Ontology Exchange Language is an xml for exchanging both database schema's
and data. It's based on relatively generic tags and could probably
represent almost any data. |
| Brad's Paper |
Here's my paper from the fall of '99 detailing my thoughts on working
towards a biological xml standard. You'll see it's quite similar
to the ideas of the original bioxml designers who decided to base standards
around a set of tags instead of full dtd's. |
| Bio-XML
Workshop |
Alan Robinson's workshop on biology and xml. -> Lots of Word
and Powerpoint files. |
| MicroArray dtd |
The MGED MicroArray XML unofficial homepage. |